When making substantial changes to a wiring harness, I like to document everything about the harness I am changing and the donor harness to make sure that 1) I understand how the harnesses are put together and 2) that I don't miss anything. There is nothing worse than getting everything routed, installed connected and then find out you are missing one or two critical wires and have to undo a bunch of work. I use a tool called RapidHarness. Its purpose in life is to design and document wiring harnesses for production use, but works well for this kind of stuff. There is a free version that has some limitations in terms of connection counts and diagram counts, but should be plenty for what you want to do. You can track connectors, locations, wire gauge, wire color, connector color, length (if you want to get that detailed) and a bunch of other stuff. I like it because I can figure everything out on paper first before I unwrap anything and start pulling wires. If you go this route, I have already created a library of connector shapes that I'd be happy to send you.