Don't remove them - drill 'em! (sorry Tim) I drilled my plastic scoop bungs out last year for attempting to let more cooler fresh air move through the top end of the engine, (air cleaner area)which should help or assist to some extent the engine running cooler when the car is in motion. To what accurate extent or how effective this is, is really a guessing game. A ram air system is the better way to go of course for a direct cool air delivery to the air cleaner/carb for sure, hands down. However, for me, setting up with an aftermarket complete Ram Air system from scratch, is way too expensive, especially living in Australia.
Regards the pressure issue - i haven't noticed any changes or discrepancies as yet in that regard. I do monitor my water temp a lot when driving around or in stationary traffic throughout the year and seasons.
Regards the effect on running temps - when stationary, there have been no changes from before as you would expect. When moving out on the road from stationary, i have noticed the engine cools back down to and settles on180F very fast compared to before i drilled the bungs out. That has been a noticeable change. So there is a definate positive cooling effect taking place here from what i have done. Drilled out bungs, makes the scoops better looking in my opinion as well.
Regards dirt, bugs and water issues - no noticeable dirt issues under the hood, and because i never wash my car or drive it in wet weather, water under the hood is not an issue for me. Don't dive my car at night, only very rarely, so bugs are not an issue either.
Lastly, the front face surfaces of the bungs should have a honeycomb pattern imprinted on them. Simply use this pattern as a template for drilling out all of the holes. I didn't remove my bungs when i drilled 'em. Just drilled them in place. If drilling from front, lay down some protective tape or the like to protect the paintwork on the hood. It's easier to start with a small dia long shank drill bit , say, 1/8th dia, and drill a pilot hole in the center of each honeycomb circle. Now come in from the back and drill out each pilot hole with the selected diameter drill bit. Select a drill bit with the biggest diameter each honeycomb circle will allow. I bought a back up pair of bungs and kept them aside in case there might come a day when i want to bring the hood back to standard scoop cover.
Conclusion - for me, i'm glad i did this. There has been gain and benefit in the process. It used to bug me that you had this beautiful designed Nasa hood with the sexy scoops, and two useless plastic bungs blocking off any air flow through at all to the engine bay. It made sense to me to put the scoops to work then not at all. No regrets.
Greg.