I'd like to thank everyone for their input and ideas with my overheating issue. This weekend, I believe I've narrowed it down to be a head gasket or cracked head.
I drained the water and added a 50/50 coolant, water, mixture.
I left the water level about two inches below the filler neck.
The outside temperature was in the mid nineties.
I took the car for a thirty minute ride through the back roads, ending at a friends house, who is very knowledgeable about cars.
After arriving at his house, I checked the temporary coolant overflow tank that I installed. I was surprised to see only a tablespoon or so, of coolant.
Using the infra-red temperature gun, he found that the intake manifold feed to the number five cylinder was considerably warmer than the others. It was in this area that I was hearing what I described as a knocking sound.
The car sat for a few minutes while we discussed what the problem could be. During this time, with the motor off, surging could be heard in the upper radiator hose.
We decided to do another test to see if any combustion gases were in the radiator. I had done two previous test on different days. One test the fluid turned green, on the second test the fluid remained blue.
When he released the pressure on the radiator cap, he was surprised at how little pressure was in the system.
I started the engine, and the test for combustion gases in the radiator turned positive immediately. Also, the water was flowing freely through the radiator.
I conclude that in my previous efforts to locate the overheating problem, the cars engine was not truly up to operating temperature, although the gauge on the dashboard indicated otherwise.
Eureka!! So now I guess you're going to pull the left bank cylinder head. Perhaps not necessary, but if you have the intake off and the left head, perhaps it might be prudent to replace both head gaskets. That way you will, have even thicknesses of gasket.... and peace of mind!!
Comments have been made before about suspecting the head gaskets, but pulling heads is not a fun job until all other possibilities have been exhausted, which looks like has been done.
Reading other posts on the replacement of intake manifolds and the valley pan and gaskets, you will have noted that it is not a good idea to use the rubber end seals, but to use a good bead of "The Right Stuff" as well as around the ports as described in the instructions (Fel-Pro). Others prefer NOT to use silicone based sealants around ports as it does not tolerate gasoline. Aircraft grade Permatex (or Permatex 2) worked for me.
Anyway, you'll be back on the road soon with the overheating issues gone.
All the best,
Geoff.