After I replaced my Z-bar, my rods, all the bushings and my springs, and set the correct linkage clearance on the bottom bar, my clutch pedal would sit 1" above the brake, and it would come up and down really smoothly. Regrettably I could not replace the lower clutch rod with the new one I had gotten as the clutch fork had a hole in it and the previous owner had put a really thick bar down there so that it would not go through the fork. I have a new fork, but I have yet to pull the transmission to replace it.
Now, this is what I found out about the pop. After everything was working perfectly (obviously the fork and lower rod still need to be changed), I started the car and ran it, when I pressed the clutch all the way to the floor, I had the most horrible grinding noise you have ever heard, it was bad. There are a couple of things that can make that noise, but honestly it seems like the fork is hitting the pressure plate. If you only press the pedal to about an inch, inch and a half from the floor, no issue, as soon as you go beyond that, all hell breaks loose. I did not have this noise before, but everything was loose down there. I went and adjusted the lower clutch rod out until I could press the clutch all the way in with no noise, but now the pedal will not come up. Originally before I changed everything, the pedal would not come up, so I am back to where I started, lol. So, your adjustment may just be off. The clearance needed between the clutch rod and the fork is right a .200 of an inch, I know that I am now at about 1 inch clearance so that I do not get the grinding noise. As that clearance changes the angle of the bars on the Z-bar changes, and it seems that after a certain angle change, the spring that goes from the z-bar to the frame can no longer pull the pedal up. You may just be able to adjust your linkage and it may start working as it should, or maybe just changing the spring from the z-bar to the frame may do the trick.
After I went through this, I would say that you would be lucky to not have to change most of your clutch linkage, the little plastic bushings are not the best idea in the world and as soon as they fail, and they will fail, you have metal on metal contact. If you are lucky and the bushings are still there or partially there, and the parts have not been egged out of shape, then you can just replace all the bushings, grease everything, adjust the clearances, change those 2 lower springs and be on your way.